In D&D 3.5 Do monks take a Two handed penalty?

With Monks using both fists or quarterstaff, club, crossbow (light or heavy), dagger, handaxe, javelin, kama, nunchaku etc. If I decide to use say 2 Nunchaku will I suffer the dual weapon penalty? Should I take the dual weapon specialization feat/Improved? Also I was wondering what a solid starter monks stats would look like. My stat rolls were pretty awful and I'm going to be allowed to re-roll them due to my lack of effectiveness in my last campaign